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Sarkytob — Stem cross-section grape berry

Published: 2011-09-27 18:12:40 +0000 UTC; Views: 2794; Favourites: 35; Downloads: 88
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Here you can see a micrography of a cross-section through the pedicel of a grape berry (the part connecting the single fruit to the bunch ) at 20-fold magnification.
It was stained to contrast the xylem-vessels (the tubes for long-distance water transport in a plant) - the red to pink part of the picture.
It consist of many single images, each showing another sector of the cross-section. It was taken with a motorized micoscop stage which automatically shiftet the slide containing the cross-section to the next section after taking a photo of the current section in view. So it was scanned piecewise.
The original image had 5201x5498 pixel at 200dpi, i reduced both to make it more handsome for the upload (as uncompressed tif it had roundabout 84 MB).

I just like the outcome (Even so the cross-section wasn't done optimal so it was unequally thick which lead to some out-off-focus parts)
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Comments: 59

Sarkytob In reply to ??? [2012-06-26 22:13:57 +0000 UTC]

Ah, thankyou so much. Yes it is indeed.

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A7XFan666 In reply to Sarkytob [2012-06-26 22:18:44 +0000 UTC]

You're welcome

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DenisLi [2012-04-15 10:19:37 +0000 UTC]

I don't really get what I'm I looking at, but it is fascinating!

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Sarkytob In reply to DenisLi [2012-04-15 15:57:17 +0000 UTC]

Thanks for faving

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Sarkytob In reply to DenisLi [2012-04-15 15:56:59 +0000 UTC]

Haha, yes its difficult to interpret if you're not used to these kinds of pictures.
What you see is the cut-surface of a grape berry stem (the connection of the single berry to the bunch) sliced like you would do for timber a tree, or you want to get a disc out of a trunk.
You can see single cells (at least in some parts as the disc was still a bit to thick for optimal light-microscopy)and the red coloured parts are the "tubes" (also cut like a trunk so you only see the "endings") in which the water is transported from the plant to the berry.

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DenisLi In reply to Sarkytob [2012-04-15 16:28:07 +0000 UTC]

Oh, I get it. I guess? (I've attended some biology classes with this stuff, but it's still pretty confusing).

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Sarkytob In reply to DenisLi [2012-04-15 17:19:57 +0000 UTC]

Yeah, as i said its not an optimal section so mostly there are more than one layer of cells viewable.

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Sea-Of-lLights [2011-10-17 19:37:46 +0000 UTC]

abstract and natural ART:

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Sarkytob In reply to Sea-Of-lLights [2011-10-17 19:49:36 +0000 UTC]


Looks indeed somehow abstract, although its completly builded off functional structures.

Thank you very much for the

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nabi4 [2011-10-15 16:59:04 +0000 UTC]

Nature is the best designer

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Sarkytob In reply to nabi4 [2011-10-15 17:14:47 +0000 UTC]

Absolutly agreed

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nabi4 In reply to Sarkytob [2011-10-15 17:23:57 +0000 UTC]

What dye did you use?
Looking forward to more fruits of your micrography (pun fully intended) fellow Mad Scientist^^

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Sarkytob In reply to nabi4 [2011-10-15 17:39:10 +0000 UTC]

Phloroglucin and hydrochloric acid, stains a certain molcule of the lignin, which is in this case only present in the xylem vessels.
Probably i don't publish more micrographs as i'm finished my experiments and this was the only interesting one.

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nabi4 In reply to Sarkytob [2011-10-15 17:58:41 +0000 UTC]

Shame
Wish I could get my hands on a piece of equipment like that!

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Sarkytob In reply to nabi4 [2011-10-15 18:20:29 +0000 UTC]

Well, yes is a great micoroscope and heavily used in our workgroup, mostly including the fluorescence unit. But the most speciems are prepared to do some sort of measurments on them and not for publishing purposes, so we normally don't mind if parts of the resulting pic is out of focus due to slightly wrinkels and slightly differences in object heigt. And additionally we don't have a microtome or working with embedded objects, meaning we only do handcuts

May i ask you, if you also work in this field somehow?

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nabi4 In reply to Sarkytob [2011-10-15 18:24:40 +0000 UTC]

To some extent, biotechnology graduate
Now I mostly dabble in college chemistry though

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Sarkytob In reply to nabi4 [2011-10-15 18:44:23 +0000 UTC]

I see, so i can in future use more specific terms in describing
I'm more into classical plant physiology, but nowadays you nearly can't do anything in the biolocical sciences without some moelcular background or using biotechnolical methods

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nabi4 In reply to Sarkytob [2011-10-15 18:54:28 +0000 UTC]

Yup I will definitely get that lingo, it's the plant physiology that will need some brushing up ^^'

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Sarkytob In reply to nabi4 [2011-10-15 19:14:58 +0000 UTC]

Great, this makes things easier
For me its the other way round - our work group is more or less divided into to parts, the classical "paper and pen" one (using balances, photometers etc) and the molecular one. The last time i actuallay worked with molecular methodolgy was for my diploma (5 years or more back in time ). Regularly we have seminars together and its really hard for me to follow them explaining their newest results using (for example) recent methodology for the expression analysis of genes

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NightElf86 [2011-10-11 17:14:11 +0000 UTC]

Ha, I just remembered I have a sketchbook full of sketches of plants and their parts under the microscope, from my botany classes.

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Sarkytob In reply to NightElf86 [2011-10-11 17:36:05 +0000 UTC]

Yes, we had to do this too, but my sketching skills are a bit underdeveloped, HaHa, so they really looked awful

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NightElf86 In reply to Sarkytob [2011-10-11 17:38:08 +0000 UTC]

Mine are not that bad I guess. I remember people always taking my sketchbook to copy it, haha. Anyway, I believe there is always room for improvement, so don't let yourself get discouraged. All you need is a bit of practice, just like me.

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Sarkytob In reply to NightElf86 [2011-10-11 17:57:33 +0000 UTC]

Haha, ok, thats a good indicator. It means also that you are a good observer , Its not always easy to view the essential structures of an object

Thats true - nowadays i haven't to do sketches anymore, hopefully i will finish my graduation till end of the year

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NightElf86 In reply to Sarkytob [2011-10-11 18:19:15 +0000 UTC]

Thank you. I don't consider myself to be an artist, but I do observe well at times.

Best of luck with your graduation. Maybe some day I will graduate too, haha!

Oh and, I see you're a fellow Pratchett fan. Yay!

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Sarkytob In reply to NightElf86 [2011-10-11 18:45:05 +0000 UTC]

Thanks
If you don't start a career before outside the university you will for sure

Oh yes - i could read every single book of him a thousand times, they are so amazing funny and on the same side full of wisdom

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NightElf86 In reply to Sarkytob [2011-10-11 19:06:27 +0000 UTC]

Haha, I doubt that. But thank you for the kind words.

Yes, Terry is a philosopher of a special kind.

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Sarkytob In reply to NightElf86 [2011-10-11 19:28:52 +0000 UTC]

So, now i'm a bit curious - you do a bachelor or master? What are your plans for the time after finishing?

Abolutly agreed.

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NightElf86 In reply to Sarkytob [2011-10-11 20:31:44 +0000 UTC]

I sent you a note.

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Sarkytob In reply to NightElf86 [2011-10-11 20:55:16 +0000 UTC]

Thankyou

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NightElf86 [2011-10-11 14:49:28 +0000 UTC]

I'm a student of agriculture and I remember when I first saw a stem under a microscope... I was amazed how many wonderful colors are in there and how everything looked like art.

I love your photo! Good job!

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Sarkytob In reply to NightElf86 [2011-10-11 16:43:36 +0000 UTC]

Thank you very much
Yeah, i also like this structures. It was actually a picture taken for measurements at the vessels and never meant to be published. As it never will be published in a scientific journal i took the opportunity to upload it here

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NightElf86 In reply to Sarkytob [2011-10-11 16:51:09 +0000 UTC]

It's really brilliant! For some reason it made me really happy. So thank you for uploading it here.

You know, you actually gave me an idea... Next time I manage to get into the lab, I'll try to borrow one slide and turn it into art!

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Sarkytob In reply to NightElf86 [2011-10-11 16:54:45 +0000 UTC]

Great, i'm curious for the outcome

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NightElf86 In reply to Sarkytob [2011-10-11 17:06:40 +0000 UTC]

Me too!

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Monaco29 [2011-10-11 00:39:28 +0000 UTC]

Awesome!

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Sarkytob In reply to Monaco29 [2011-10-11 16:38:15 +0000 UTC]

Thankyou very much

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Monaco29 In reply to Sarkytob [2011-10-11 17:01:34 +0000 UTC]

Welcome!

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XxSilverMoonFoxX [2011-10-10 17:41:36 +0000 UTC]

Isn't biology amazing?

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Sarkytob In reply to XxSilverMoonFoxX [2011-10-10 18:45:07 +0000 UTC]

Yes, absolutly

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XxSilverMoonFoxX In reply to Sarkytob [2011-10-10 20:08:19 +0000 UTC]

What type of microscope were you using for the shot? Compound?

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Sarkytob In reply to XxSilverMoonFoxX [2011-10-10 21:16:37 +0000 UTC]

I used our research microscop in the lab - an olympus BX60 (this is the follow up one:[link] ) - which also can be used for fluorescence imaging. Is customized additionally with a motorized stage, so that the object can be moved automatically with defined steps to scan larger objects which don't fit completly in the view window of the objective. As it is used for fluorescence microscopy it is equiped with a camera with a very high aperture.

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XxSilverMoonFoxX In reply to Sarkytob [2011-10-10 22:24:07 +0000 UTC]

0_0 It's beautiful! That's one intense microscope. The only two I've ever used are dissecting and compound. They're both very cool but they don't have anywhere near the same objective or resolution capabilities.

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Sarkytob In reply to XxSilverMoonFoxX [2011-10-10 22:58:05 +0000 UTC]

Yes it is - working with it can be very exiting. But it has its price of course - at least a years salary or more. Alone the lamp for the fluorescence is worth round about 200 Euros and has to be replaced regularly. We use it mainly for analysing cracks in the fruit skin
We have a very well dissecting microscope too - this is even more amazing, you can nearly see the single cells at the highest magnification and that three-dimensional. Unfortunately, the camera can't catch the fantastic 3D view and at the moment i don't have any pics i'm allowed to publish here. Maybe i'll do some especially for DA some day

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XxSilverMoonFoxX In reply to Sarkytob [2011-10-11 23:22:09 +0000 UTC]

Wow, that's a lot of money. I know even some of the cheapest microscopes can cost thousands. Cracks in fruit skin? That's an interesting topic to be studying. That makes sense since I'm sure a lot of the photos being taken are for research purposes. It would be really cool to do something like that. Pictures of cells are rather uncommon on DA and not to mention most people don't ever get to see things like that up close unless they are scientists.

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Sarkytob In reply to XxSilverMoonFoxX [2011-10-12 17:17:54 +0000 UTC]

Yes, thats true - well here is a group called microscopy, which have some pics like this and also fantastic microcraphs taken with an electron microscope.

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XxSilverMoonFoxX In reply to Sarkytob [2011-10-12 18:22:49 +0000 UTC]

0_0 sounds very cool! I'll have to check it out.

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Sarkytob In reply to XxSilverMoonFoxX [2011-10-12 18:30:17 +0000 UTC]

Yes - they have only very few members but some really amazing pics

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XxSilverMoonFoxX In reply to Sarkytob [2011-10-12 21:08:20 +0000 UTC]

0_0 I see what you mean....they do.

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Misa-chan11 [2011-09-30 17:24:37 +0000 UTC]

wow sees Ma geiloo from *Q*
what is this? xD

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Sarkytob In reply to Misa-chan11 [2011-10-01 09:49:14 +0000 UTC]

Thank you very much
I'll explain it in german for you and all the others who don't are familar with the english technical terms:

Das ist ein Querschnitt durch das Stielchen einer Weinbeere, fotografiert mit einem Mikroskop bei 20facher Vergrößerung.
Die Details lassen sich besser im Vollbild erkennen (einfach draufklicken ): Das Rot gefärbte in der Mitte ist die "Wasserleitung", lauter schmale Röhrchen, in denen das Wasser von der Wurzel über den Spross bis in die Beere transportiert wird (ist in Wirklichkeit etwas komplizierter, alle Botaniker/biologen mögen mir die Vereinfachungen verzeihen), die nicht gefärbten braune Teile dazwischen dienen zur Verstärkung des ganzen. Die rot gefärbten Teile sind mit einem Farbstoff gefärbt worden, sind in Wirklichkeit nicht rot und sehen von der Farbe so aus, wie der Rest drumherum .
Die dunkleren Zellen in dem äußeren Kreis um den rot gefärbten Zellen gehören zum 2. Leitugnssystem der Pflanze, in dem Zucker und Nährstoffe transportiert werden (und ebenfalls Wasser).
Daran schließt sich nach außen hin Grundgewebe an, in dem unter anderem Stoffwechsel-Vorgänge ablaufen. Ganz außen ist dann das Abschlussgewebe (sozusagen die "Rinde", der Begriff ist in dem Fall aber falsch).

Das Bild ist aus vielen Einzelbildern zusammengesetzt, die automatisch aufgenommen und zusammengesetzt wurden (Der Mikroskoptisch, also da wo der Querschnitt drauflag, wurde Computer gesteuert stückweise unter dem Objektiv verschoben und jeweils ein Bild gemacht, eine Software hat das dann hinterher zusammengesetzt, wenn man genau hinsieht, kann man teilweise die Bildgrenzen der Einzelbilder sehen).

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